Lumminary genomics — query genes and SNPs within a client's dataset, and manage product authorizations.

Provided free and as is, without warranty of any kind — including merchantability, fitness for a particular purpose, and the accuracy or completeness of any result. See the licence. You are responsible for checking what this produces before relying on it.

Lumminary

Tool for the lumminary API.

Base URL: https://api.lumminary.com/v1
Auth: header:Authorization (pass your key via the apiKey input)

Operations

get_client_gene — GET /clients/{clientId}/datasets/{datasetId}/genes/{geneSymbol} — Get gene by symbol
get_client_snp_group — GET /clients/{clientId}/datasets/{datasetId}/snps/
get_client_snp — GET /clients/{clientId}/datasets/{datasetId}/snps/{snpId} — Get SNP information
get_product — GET /products/{productId} — Get product details
get_authorizations_queue — GET /products/{productId}/authorizations
get_product_authorization — GET /products/{productId}/authorizations/{authorizationId}

Inputs

apiKey — your lumminary API key
operation — one of the operations above
path parameters when an operation's path contains {...}
query — optional JSON object of query params
body — JSON object for create/update ops

Example

operation: get_client_gene
apiKey: <your key>

Publishes

The keys a later task may reference as {{taskName.key}}. Referencing anything not listed here resolves to nothing at run time.

error
operation
result
status

Input Properties

Every property this tool accepts, from its own tool.iml.

Property	Type	Required	Default	Description
`apiKey`	string	yes	—	DEPRECATED — bind an API Key credential to the task with `credentialName` instead. A key pasted here is stored in the workflow definition in clear and appears in every export of it. Still honoured for workflows built before the change.
`operation`	string	yes	—	One of: get_client_gene, get_client_snp_group, get_client_snp, get_product, get_authorizations_queue, get_product_authorization
`authorizationId`	string	no	—	Path parameter authorizationId (required by some operations).
`clientId`	string	no	—	Path parameter clientId (required by some operations).
`datasetId`	string	no	—	Path parameter datasetId (required by some operations).
`geneSymbol`	string	no	—	Path parameter geneSymbol (required by some operations).
`productId`	string	no	—	Path parameter productId (required by some operations).
`snpId`	string	no	—	Path parameter snpId (required by some operations).
`query`	string	no	—	Optional query params as a JSON object string, e.g. {"limit": 10}.