Firebrowse

Firebrowse is an API for accessing curated cancer genomics data, especially TCGA data from the Broad Institute.

• Base URL: http://firebrowse.org/api/v1
• Auth: bearer (pass your key via the apiKey input)

Operations

• all — GET /Analyses/CopyNumber/Genes/All — Retrieve all data by genes Gistic2 results.
• amplified — GET /Analyses/CopyNumber/Genes/Amplified — Retrieve Gistic2 significantly amplified genes results.
• deleted — GET /Analyses/CopyNumber/Genes/Deleted — Retrieve Gistic2 significantly deleted genes results.
• focal — GET /Analyses/CopyNumber/Genes/Focal — Retrieve focal data by genes Gistic2 results.
• thresholded — GET /Analyses/CopyNumber/Genes/Thresholded — Retrieve all thresholded by genes Gistic2 results.
• featuretable — GET /Analyses/FeatureTable — Retrieve aggregated analysis features table.

Inputs

• apiKey — your firebrowse API key
• operation — one of the operations above
• path parameters when an operation's path contains {...}
• query — optional JSON object of query params
• body — JSON object for create/update ops

Example

operation: all
apiKey: <your key>

Publishes

The keys a later task may reference as {{taskName.key}}. Referencing anything not listed here resolves to nothing at run time.

• error
• operation
• result
• status

Input Properties

Every property this tool accepts, from its own tool.iml.